#!/bin/sh
# Copyright 2007, 2008, 2009 Michael Creel <michael.creel@uab.es>
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
# set this to the network you'd like to use for the cluster

# make_pelican: this script allows you to make a custom version
# of the PelicanHPC live CD image for creation of high performance
# computing clusters. You need to install the live_helper package to use
# it. See http://pareto.uab.es/mcreel/PelicanHPC for more information.

# Version 1.9
# * fix message box when no NIC found (thanks forum member WileECoyote)
# * fix some problems due to use of cp rather than rsync (rsync now a dependency) Thanks forum member KernalPanic.
# * frontend boots to console, to avoid possible problems with graphics cards
# * update some of the examples, and general package sync to released Debian Lenny

############ packages to add - place names of packages you want here ####################
cat <<PACKAGELIST > addlist
# basic stuff needed for cluster setup
ssh dhcp3-server nfs-kernel-server nfs-common atftpd
# binary blobs for networking
firmware-bnx2 firmware-iwlwifi firmware-ralink linux-wlan-ng-firmware
# resource management
slurm-llnl slurm-llnl-sview slurm-llnl-basic-plugins
# configuration and tools
wget bzip2 dialog less net-tools rsync fping screen
make htop fail2ban locales console-common ifenslave
# mail support (to forward status reports)
bsd-mailx liblockfile1 mailx postfix ssl-cert 
# MPI
lam-runtime lam4-dev openmpi-bin openmpi-dev
# Octave
octave3.0 octave3.0-headers gnuplot
# Python
python-scipy python-matplotlib python-numpy ipython lampython
# other scientific
gfortran libatlas-headers libatlas3gf-base
# X stuff
xorg xfce4 konqueror ksysguard ksysguardd kate
konsole  kdenetwork kdeadmin kcontrol kpdf
# Requests from users
bc libxp6
PACKAGELIST
################## END OF PACKAGELIST ################

PELICAN_NETWORK="10.11.12"
MAXNODES="100"
ARCHITECTURE="amd64"
KERNEL="amd64"
#ARCHITECTURE="i386"
#KERNEL="686"
IMAGETYPE="iso"
#IMAGETYPE="usb-hdd"
DISTRIBUTION="lenny"
MIRROR="de"

# leave the rest of this alone unless you really know what you're up to
THISDIR="`pwd`"
mkdir "$ARCHITECTURE"
cd "$THISDIR/$ARCHITECTURE"

# ############## compute node configuration ##########
# this section should be uncommented the first time
# you make Pelican for an architecture, then commented
# out, to avoid wasting time and bandwidth
LIVECDDIR="nodes"
#rm -R -f "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
rm -R -f "$THISDIR/$ARCHITECTURE"/tftpboot
mkdir "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
cd "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
lh_config -a "$ARCHITECTURE"
lh_config --categories "main contrib non-free"
lh_config --packages "firmware-bnx2 firmware-iwlwifi firmware-ralink linux-wlan-ng-firmware"
lh_config -b net
lh_config -d "$DISTRIBUTION"
lh_config -k "$KERNEL"
lh_config  --mirror-binary http://ftp.$MIRROR.debian.org/debian/ \
--mirror-chroot http://ftp.$MIRROR.debian.org/debian/ \
--mirror-bootstrap http://ftp.$MIRROR.debian.org/debian/ \
--mirror-binary-security http://security.eu.debian.org/ \
--mirror-chroot-security http://security.eu.debian.org
lh_config --net-root-server "$PELICAN_NETWORK".1
lh_config --net-root-path "/live/image"
lh_config --bootappend-live "noautologin noxautologin"
lh_config --syslinux-timeout 10
lh_config --syslinux-menu "enabled"
lh_clean
# use local packages if they're there
rsync -az "$THISDIR"/packages/* config/chroot_local-packages
# chroot hook to use local includes (new aug 2008)
cat <<CHROOTHOOK > config/chroot_local-hooks/script.sh
#!/bin/bash
update-initramfs -u -k all
CHROOTHOOK
chmod +x config/chroot_local-hooks/script.sh
# SYSLINUX SPLASH SCREEN
if [ -e "$THISDIR/splash.rle" ]; then
  cp "$THISDIR"/splash.rle config/binary_syslinux/splash.rle
  lh_config --syslinux-splash "config/binary_syslinux/splash.rle"
fi
# post boot script to get nodes to talk to frontend
install -d config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/
cat <<99START > config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
#!/bin/sh
cat <<RC_LOCAL > /root/etc/rc.local
#! /bin/sh
pelican_boot_setup
RC_LOCAL
chmod a+x /root/etc/rc.local
99START
chmod +x config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
lh_build
cd "$THISDIR/$ARCHITECTURE"
mv "$THISDIR/$ARCHITECTURE/$LIVECDDIR"/tftpboot "$THISDIR/$ARCHITECTURE"/
# safeguard against crashes
umount proc-live
umount sysfs-live
umount devpts-live
sync
rm -R -f "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
############## end of compute node configuration ###################

# frontend configuration
LIVECDDIR="frontend"
# uncomment the next line if you really want to start from scratch
#rm -R -f "$LIVECDDIR"
mkdir "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
cd "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
lh_config --apt apt --apt-recommends disabled
lh_config -a "$ARCHITECTURE"
lh_config --categories "main contrib non-free"
lh_config -b "$IMAGETYPE"
lh_config -d "$DISTRIBUTION"
lh_config -k "$KERNEL"
lh_config  --mirror-binary http://ftp.$MIRROR.debian.org/debian/ \
--mirror-chroot http://ftp.$MIRROR.debian.org/debian/ \
--mirror-bootstrap http://ftp.$MIRROR.debian.org/debian/ \
--mirror-binary-security http://security.eu.debian.org/ \
--mirror-chroot-security http://security.eu.debian.org
lh_config -p "addlist"
lh_config --hostname pelican
lh_config --iso-volume PelicanHPC
lh_config --syslinux-timeout 20
lh_config --syslinux-menu "enabled"
lh_config --bootappend-live "ramdisk_size=100000 noautologin noxautologin"
lh_clean

# SYSLINUX SPLASH SCREEN
if [ -e "$THISDIR/splash.rle" ]; then
  cp "$THISDIR"/splash.rle config/binary_syslinux/splash.rle
  lh_config --syslinux-splash "config/binary_syslinux/splash.rle"
fi
# PACKAGE LIST
cp "$THISDIR"/addlist config/chroot_local-packageslists

########## make directories on chroot #########
install -d config/chroot_local-includes/usr/bin
install -d config/chroot_local-includes/usr/share/pelican/tftpboot
rm -R -f config/chroot_local-includes/etc/skel
install -d config/chroot_local-includes/etc/skel

########## copy stuff to be added to chroot ######
rsync -az "$THISDIR/$ARCHITECTURE"/tftpboot/* config/chroot_local-includes/usr/share/pelican/tftpboot
rsync -az "$THISDIR"/pelicanhome/* config/chroot_local-includes/etc/skel
rsync -az "$THISDIR"/packages/* config/chroot_local-packages

# chroot hook to compile stuff in /etc/skel
cat <<CHROOTHOOK > config/chroot_local-hooks/script.sh
#!/bin/bash
update-initramfs -u -k all
if [ -d "/etc/skel/Econometrics" ]; then
  LOCATION="/etc/skel/Econometrics"
  ############ MPITB ############
  cd \$LOCATION/MyOctaveFiles/mpitb/src
  make clean
  make -j8
  cd \$LOCATION/MyOctaveFiles/mpitb/DLD
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
  ############ my oct files############
  cd \$LOCATION/MyOctaveFiles/OctFiles
  echo "making my .cc files"
  make clean
  make all
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
  ######### PEA ###########
  cd \$LOCATION/Examples/Parallel/pea/example
  mkoctfile *.cc
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
fi
CHROOTHOOK
chmod +x config/chroot_local-hooks/script.sh

######## WRITE THE PELICAN SETUP SCRIPTS #############
cat <<01SETUP > config/chroot_local-includes/usr/bin/pelican_boot_setup
#!/bin/bash
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
TMP="/tmp/pelican_setup.tmp\$\$"
DIALOG="dialog"
TITLE="Pelican Setup"
exec >/dev/console </dev/console 2>&1
NORMAL=""
RED=""
GREEN=""
YELLOW=""
BLUE=""
MAGENTA=""
CYAN=""
WHITE=""
bailout(){
  # set user password
  \$DIALOG --title "\$TITLE" --inputbox "Welcome to PelicanHPC. Please type in a password, and then press <enter> to continue" 15 50 "PleaseChangeMe!" 2>/home/user/pw
  chmod 644 /home/user/pw
  read PASSWORD </home/user/pw
  echo "user:\$PASSWORD" | chpasswd
  chown -R user.user /home/user
  echo ""
  echo -n ""
  echo "\${GREEN}Welcome to \${CYAN}PelicanHPC\${GREEN}!"
  echo ""
  echo "To log in, enter \${YELLOW}user\${GREEN} as the username, and the password you just specified."
  echo "After you're logged in, you can:"
  echo ""
  echo "\${BLUE}* create a cluster: type \${YELLOW}pelican_setup\${GREEN}"
  echo "\${BLUE}* enter a desktop environment: type \${YELLOW}startx\${GREEN}"
  echo ""
  echo "For more information, visit http://pelicanhpc.org. Have fun!\${NORMAL}"
  echo ""
  exit \$1
}
bailout2(){
  read PASSWORD </home/user/pw
  echo "user:\$PASSWORD" | /usr/sbin/chpasswd
  echo "All done setting up this PelicanHPC compute node"
  echo ""
  echo -n ""
  echo "\${GREEN}This is a \${CYAN}PelicanHPC \${GREEN}compute node. It is part of a cluster of computers that is doing some \${YELLOW}REALLY important stuff\${GREEN}."
  echo ""
  echo "Please don't try to use it, and \${RED}DON'T TURN IT OFF!"
  echo ""
  echo "\${GREEN}THANKS!\${BLUE}"
  exit \$1
}
echo "Welcome to PelicanHPC!"
# things for both frontend and nodes
echo "" > /etc/motd
echo "StrictHostKeyChecking no" >> /etc/ssh/ssh_config
# test for master or compute node: $PELICAN_NETWORK will only be there at boot if this is a compute node
computenode=\`dmesg | grep -c nfsroot=$PELICAN_NETWORK\`
if [ \$computenode = 0 ]; then
# master node
rm -R -f /home
mkdir /home
mkfs.ext2 -q -m 0 /dev/ram1
rm -f "\$TMP"
\$DIALOG --title "\$TITLE" --inputbox "Do NOT type anything into this input box, it \
is only for the convenience of advanced users who have experience using PelicanHPC, and who have read the documentation to \
learn what it is used for. Press <enter> to continue" 15 50 "ram1" 2>"\$TMP"
read HOMELOCATION <"\$TMP" ; rm -f "\$TMP"
mount /dev/\$HOMELOCATION /home
install -d /home/user
MESSAGE="Copy user configuration and examples /home/user? You should probably choose YES unless you are using a specially made vesion of PelicanHPC that uses a permanent storage device, and you already have a setup you would like to keep."
\$DIALOG --defaultno --title "\$TITLE" --yesno "\$MESSAGE" 10 50 || bailout
rsync -avz /etc/skel/ /home/user/
# make .octaverc
cat <<OCTAVERC > /home/user/.octaverc
  edit 'editor'  'kate %s &'
  page_screen_output(0);
  addpath(genpath("/home/user/Econometrics/MyOctaveFiles"));
  addpath(genpath("/home/user/Econometrics/Examples"));
  putenv('MPITB_HOME', ['/home/user/Econometrics/MyOctaveFiles/mpitb']);
  warning("off","MPITB:Address-verbose")	% verbose MPI_Address
  warning("off","MPITB:getBuff-mk-unique")	% lazycopied vars -> duplicated
  warning("off","MPITB:getBuff-above-cnt")	% lazycopied vars (>2 copies)
  warning("off","MPITB:getBuff-normalcnt")	% vars with exactly 2 copies
  if isempty(getenv('LAMPARENT'))
    disp('Welcome to Octave with MPITB');
    else
    history -w /dev/null  % I don't want to see that!
    startup_NumCmds;
  endif
OCTAVERC
# Start up xfce4
install -d /home/user/.config/autostart
echo "[Desktop Entry]" >> /home/user/.config/autostart/xfce4-tips-autostart.desktop
echo "Hidden=true"  >> /home/user/.config/autostart/xfce4-tips-autostart.desktop
# echo "/usr/bin/startx" >> /home/user/.bash_profile # uncomment to make entry into GUI automatic
# support software compiled using older Open MPI 
ln -s /usr/lib/openmpi/lib/libopen-rte.so.0.0.0 /usr/lib/openmpi/lib/liborte.so.0
ln -s /usr/lib/openmpi/lib/libopen-pal.so.0.0.0 /usr/lib/openmpi/lib/libopal.so.0 
bailout
# for the compute nodes
else
rm -R -f /home
mkdir /home
mount $PELICAN_NETWORK.1:/home /home
myip=(\`/sbin/ifconfig | grep -i "Ethernet" -A 1|grep "inet addr"|cut -d  " " -f 12|cut -d ":" -f 2\`)
echo "\$myip is up" > /home/user/tmp/\$myip
# support software compiled using older Open MPI 
ln -s /usr/lib/openmpi/lib/libopen-rte.so.0.0.0 /usr/lib/openmpi/lib/liborte.so.0
ln -s /usr/lib/openmpi/lib/libopen-pal.so.0.0.0 /usr/lib/openmpi/lib/libopal.so.0 
bailout2
fi
01SETUP

cat <<02USERSETUP > config/chroot_local-includes/usr/bin/pelican_setup
  pelican_setup_user
  pelican_setup_netdevice
  pelican_terminalserver
  pelican_restart_hpc
02USERSETUP

cat <<03USER > config/chroot_local-includes/usr/bin/pelican_setup_user
#!/bin/bash
bailout(){
exit \$1
}
cd /home/user
HOME="/home/user"
PKTMP="\$HOME/tmp"
echo "Creating temporary directory"
rm -R -f \$PKTMP
mkdir \$PKTMP
chown user.user \$PKTMP
chmod 777 \$PKTMP
# regenerate keys
echo "Generating new RSA keys"
rm -f \$HOME/.ssh/id_rsa*
ssh-keygen  -q -t rsa -N "" -f "\$HOME/.ssh/id_rsa"
cp \$HOME/.ssh/id_rsa.pub \$HOME/.ssh/authorized_keys
chmod 600 \$HOME/.ssh/authorized_keys
# make list of hosts to fping
echo "$PELICAN_NETWORK.2" > \$HOME/fpinghosts
i=2
while [ \$i -lt $MAXNODES ]
do
  i=\`expr \$i + 1\`
  echo $PELICAN_NETWORK.\$i >> \$HOME/fpinghosts
done
bailout
03USER

cat <<04NETDEVICE > config/chroot_local-includes/usr/bin/pelican_setup_netdevice
#!/bin/bash
# modification of netcardconfig from Knoppix.
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
DIALOG="dialog"
[ "\`id -u\`" != "0" ] && exec sudo "\$0" "\$@"
TMP="/tmp/netconfig.tmp\$\$"
bailout(){
rm -f "\$TMP"
exit \$1
}
TITLE="Pelican Setup"
MESSAGE0="No supported network cards found."
MESSAGE1="Please select the network device that connects to the cluster."
NETDEVICES="\$(cat /proc/net/dev | awk -F: '/eth.:|br.:|tr.:|wlan.:/{print \$1}')"
if [ -z "\$NETDEVICES" ]; then
\$DIALOG --title "\$TITLE" --msgbox "\$MESSAGE0" 5 30
bailout
fi
count="\$(echo "\$NETDEVICES" | wc -w)"
if [ "\$count" -gt 1 ]; then
DEVICELIST=""
for DEVICE in \$NETDEVICES; do DEVICELIST="\$DEVICELIST \${DEVICE} network_device_\${DEVICE}"; done
rm -f "\$TMP"
echo "Hints about your net devices"
dmesg|grep eth
rm -f "\$TMP"
\$DIALOG --menu "\$MESSAGE1" 18 45 12 \$DEVICELIST 2>"\$TMP" || bailout
read DV <"\$TMP" ; rm -f "\$TMP"
else
# Remove additional spaces
DV="\$(echo \$NETDEVICES)"
fi
IP="$PELICAN_NETWORK.1"
NM="255.255.255.0 "
BC="$PELICAN_NETWORK.255"
ifdown \$DV
sleep 4
CMD="ifconfig \$DV \$IP netmask \$NM broadcast \$BC up"
\$CMD
bailout
04NETDEVICE

cat <<05TERMINALSERVER > config/chroot_local-includes/usr/bin/pelican_terminalserver
#!/bin/sh
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
DIALOG="dialog"
[ "\`id -u\`" != "0" ] && exec sudo "\$0" "\$@"
bailout(){
exit \$1
}
cp -a /usr/share/pelican/tftpboot/* /var/lib/tftpboot/
# configure dhcp
cat <<DHCP > /etc/dhcp3/dhcpd.conf
# global settings
allow booting;
allow bootp;
default-lease-time 600;
max-lease-time 7200;
subnet $PELICAN_NETWORK.0 netmask 255.255.255.0 {
  next-server $PELICAN_NETWORK.1;
  filename "pxelinux.0";
  option subnet-mask 255.255.255.0;
  range $PELICAN_NETWORK.2 $PELICAN_NETWORK.$MAXNODES;
}
DHCP

# tftpd - use one or the other
# configure tftpd-hpa
#cat <<TFTP > /etc/default/tftpd-hpa
#Defaults for tftpd-hpa
#RUN_DAEMON="yes"
#OPTIONS="-l -s /var/lib/tftpboot"
#TFTP
# configure atftpd
cat <<TFTP > /etc/default/atftpd
USE_INETD=false
OPTIONS="--daemon --port 69 --tftpd-timeout 300 --retry-timeout 5     --mcast-port 1758 --mcast-addr 239.239.239.0-255 --mcast-ttl 1 --maxthread 100 --verbose=5  /var/lib/tftpboot"
TFTP

# generate /etc/exports
cat <<EXPORTS > /etc/exports
/live/image *(ro,async,no_subtree_check,no_root_squash,fsid=12345)
/home $PELICAN_NETWORK.0/255.255.255.0(rw,root_squash,async,no_subtree_check)
EXPORTS

# start services
TITLE="Start Pelican HPC netboot services"
MESSAGE="We now get ready to set up the cluster by starting services that will allow the compute nodes to netboot. \
IMPORTANT: do not proceed if your cluster is on an existing network, or PelicanHPC's dhcp server may conflict \
with a running dhcp server. Continue?"
\$DIALOG --title "\$TITLE" --yesno "\$MESSAGE" 15 90 || bailout
sync
/etc/init.d/atftpd start
/etc/init.d/dhcp3-server start
/etc/init.d/nfs-kernel-server start
bailout
05TERMINALSERVER

cat <<06HPC > config/chroot_local-includes/usr/bin/pelican_restart_hpc
#!/bin/sh
PKTMP="/home/user/tmp"
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
DIALOG="dialog"
bailout(){
exit 0
}
# check which nodes are up
checknodes(){
rm \$PKTMP/bhosts
sudo fping -a -q -r0 -f /home/user/fpinghosts > \$PKTMP/bhosts
}
retry(){
checknodes
NNODES="\$(grep -c "" \$PKTMP/bhosts)"
MESSAGENODES="\nGo turn on your compute nodes now. \n\nAt the moment \$NNODES compute nodes (not counting this frontend node) are available. \n\nClick no to rescan the available nodes. Click yes when the desired number of nodes are available. You might want to wait a bit if some nodes are still finishing booting up."
\$DIALOG --title "\$TITLE" --defaultno --yesno "\$MESSAGENODES" 20 50 || retry
}
trap bailout 1 2 3 15
TITLE="Restart Pelican HPC"
MESSAGE="\nTime to bring the compute nodes into the cluster. If you are resizing a running cluster, be aware that continuing will interrupt any running MPI jobs. Continue?"
\$DIALOG --title "\$TITLE" --yesno "\$MESSAGE" 15 90 || bailout
retry
# master must be last in the list
echo "$PELICAN_NETWORK.1" | cat >> \$PKTMP/bhosts
# lamboot 2X to generate known_hosts (and an error message) the first time
lamwipe
lamboot \$PKTMP/bhosts
lamwipe
lamboot \$PKTMP/bhosts
lamnodes
sleep 5
# display success message
NNODES="\$(grep -c "" \$PKTMP/bhosts)"
# final report
SUCCESS="\nYour cluster of \$NNODES nodes is (probably) lambooted. If there was a problem, just re-run the script.\nThe nodes in the cluster are listed in the file ~/tmp/bhosts. If you add or remove compute nodes, re-run this script (pelican_restart_hpc) whenever you like."
\$DIALOG --title "\$TITLE" --msgbox "\$SUCCESS" 15 50
bailout
06HPC
######## END OF PELICAN SETUP SCRIPTS #############


######## POST BOOT SCRIPT ####################
install -d config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/
cat <<99START > config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
#!/bin/sh
cat <<RC_LOCAL > /root/etc/rc.local
#! /bin/sh
pelican_boot_setup
RC_LOCAL
chmod a+x /root/etc/rc.local
99START
chmod +x config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script

# make the scripts in /usr/bin executable
chmod +x config/chroot_local-includes/usr/bin/*

# build the ISO image
nice ionice -c2 lh_build --debug

# safeguard against crashes
umount proc-live
umount sysfs-live
umount devpts-live
sync