#!/bin/sh
# Copyright 2007, 2008 Michael Creel <michael.creel@uab.es>
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
# set this to the network you'd like to use for the cluster

# make_pelican: this script allows you to make a custom version
# of the PelicanHPC live CD image for creation of high performance
# computing clusters. You need to install the live_helper package to use
# it. See http://pareto.uab.es/mcreel/PelicanHPC for more information.

# Version 1.7.1
# new since 1.7:
# a few little fixes to make a generic (without examples) image work better

############ packages to add - place names of packages you want here ####################
cat <<PACKAGELIST > addlist
# basic network stuff
ssh dhcp3-server nfs-kernel-server
atftpd
#tftpd-hpa
# configuration and tools
wget bzip2 dialog less net-tools rsync fping screen
make htop fail2ban
# MPI
lam-runtime lam4-dev openmpi-bin openmpi-dev
# Octave
octave3.0 octave3.0-headers gnuplot
# Python
python-scipy python-matplotlib python-numpy ipython lampython
# other scientific
gfortran libatlas-headers libatlas3gf-base
# X stuff
xorg xfce4 konqueror ksysguard ksysguardd kate kpdf
konsole kcontrol kdenetwork kdeadmin
PACKAGELIST
################## END OF PACKAGELIST ################

PELICAN_NETWORK="10.11.12"
MAXNODES="20"
PASSWORD="live"
#ARCHITECTURE="amd64"
#KERNEL="amd64"
ARCHITECTURE="i386"
KERNEL="686"
DISTRIBUTION="lenny"
MIRROR="de"

# leave the rest of this alone unless you really know what you're up to
THISDIR="`pwd`"
mkdir "$ARCHITECTURE"
cd "$THISDIR/$ARCHITECTURE"

# ############## compute node configuration ##########
# this section should be uncommented the first time
# you make Pelican for an architecture, then commented
# out, to avoid wasting time and bandwidth
LIVECDDIR="nodes/"
#rm -R -f "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
rm -R -f "$THISDIR/$ARCHITECTURE"/tftpboot/
mkdir "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
cd "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
lh_config -a "$ARCHITECTURE"
lh_config -b net
lh_config -d "$DISTRIBUTION"
lh_config -k "$KERNEL"
lh_config  --mirror-binary http://ftp.$MIRROR.debian.org/debian/ \
--mirror-chroot http://ftp.$MIRROR.debian.org/debian/ \
--mirror-bootstrap http://ftp.$MIRROR.debian.org/debian/ \
--mirror-binary-security http://security.eu.debian.org/ \
--mirror-chroot-security http://security.eu.debian.org
lh_config --net-root-server "$PELICAN_NETWORK".1
lh_config --net-root-path "/live/image"
lh_config --bootappend-live "quiet vga=791 noautologin noxautologin"
lh_config --syslinux-timeout 10
lh_clean
# use local packages if they're there
cp -a "$THISDIR"/packages/* config/chroot_local-packages
# chroot hook to use local includes (new aug 2008)
cat <<CHROOTHOOK > config/chroot_local-hooks/script.sh
#!/bin/bash
update-initramfs -u -k all
CHROOTHOOK
chmod +x config/chroot_local-hooks/script.sh
# SYSLINUX SPLASH SCREEN
if [ -e "$THISDIR/splash.rle" ]; then
  cp "$THISDIR"/splash.rle config/binary_syslinux/splash.rle
  lh_config --syslinux-splash "config/binary_syslinux/splash.rle"
fi
# post boot script to get nodes to talk to frontend
install -d config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/
cat <<99START > config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
#!/bin/sh
cat <<RC_LOCAL > /root/etc/rc.local
#! /bin/sh
pelican_boot_setup
RC_LOCAL
chmod a+x /root/etc/rc.local
99START
chmod +x config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
lh_build
cd "$THISDIR/$ARCHITECTURE"
mv "$THISDIR/$ARCHITECTURE/$LIVECDDIR"/tftpboot "$THISDIR/$ARCHITECTURE"/
# safeguard against crashes
umount proc-live
umount sysfs-live
umount devpts-live
sync
rm -R -f "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
############## end of compute node configuration ###################

# frontend configuration
LIVECDDIR="frontend/"
# uncomment the next line if you really want to start from scratch
#rm -R -f "$LIVECDDIR"
mkdir "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
cd "$THISDIR/$ARCHITECTURE/$LIVECDDIR"
lh_config --apt apt --apt-recommends disabled
lh_config -a "$ARCHITECTURE"
lh_config -d "$DISTRIBUTION"
lh_config -k "$KERNEL"
lh_config  --mirror-binary http://ftp.$MIRROR.debian.org/debian/ \
--mirror-chroot http://ftp.$MIRROR.debian.org/debian/ \
--mirror-bootstrap http://ftp.$MIRROR.debian.org/debian/ \
--mirror-binary-security http://security.eu.debian.org/ \
--mirror-chroot-security http://security.eu.debian.org
lh_config -p "addlist"
lh_config --hostname pelican
lh_config --iso-volume PelicanHPC
lh_config --syslinux-timeout 20
lh_config --bootappend-live "quiet vga=791 ramdisk_size=100000"
lh_clean
# SYSLINUX SPLASH SCREEN
if [ -e "$THISDIR/splash.rle" ]; then
  cp "$THISDIR"/splash.rle config/binary_syslinux/splash.rle
  lh_config --syslinux-splash "config/binary_syslinux/splash.rle"
fi
# PACKAGE LIST
cp "$THISDIR"/addlist config/chroot_local-packageslists

########## make directories on chroot #########
install -d config/chroot_local-includes/usr/bin
install -d config/chroot_local-includes/usr/share/pelican/tftpboot
rm -R -f config/chroot_local-includes/etc/skel
install -d config/chroot_local-includes/etc/skel

########## copy stuff to be added to chroot ######
cp -a "$THISDIR/$ARCHITECTURE"/tftpboot/* config/chroot_local-includes/usr/share/pelican/tftpboot
cp -a "$THISDIR"/pelicanhome/* config/chroot_local-includes/etc/skel
cp -a "$THISDIR"/packages/* config/chroot_local-packages

# chroot hook to compile stuff in /etc/skel
cat <<CHROOTHOOK > config/chroot_local-hooks/script.sh
#!/bin/bash
update-initramfs -u -k all
if [ -d "/etc/skel/Econometrics" ]; then
  LOCATION="/etc/skel/Econometrics"
  ############ MPITB ############
  cd \$LOCATION/MyOctaveFiles/mpitb/src
  make clean
  make -j8
  cd \$LOCATION/MyOctaveFiles/mpitb/DLD
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
  ############ my oct files############
  cd \$LOCATION/MyOctaveFiles/OctFiles
  echo "making my .cc files"
  make clean
  make all
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
  ######### PEA ###########
  cd \$LOCATION/Examples/Parallel/pea/example
  mkoctfile *.cc
  FILES="*.oct"
  for f in "\$FILES"; do strip \$f; done
fi
CHROOTHOOK
chmod +x config/chroot_local-hooks/script.sh

######## WRITE THE PELICAN SETUP SCRIPTS #############
cat <<01SETUP > config/chroot_local-includes/usr/bin/pelican_boot_setup
#!/bin/bash

# Clean input/output
exec >/dev/console </dev/console 2>&1

bailout(){
  chown -R user.user /home/user
  exit \$1
}
bailout2(){
  echo "All done setting up this PelicanHPC compute node"
  echo ""
  echo -n ""
  echo "This is a PelicanHPC compute node. It is part of a cluster of computers that is doing some REALLY important stuff."
  echo ""
  echo "Please don't try to use it, and DON'T TURN IT OFF!"
  echo ""
  echo "THANKS!"
  exit \$1
}

DIALOG="dialog"
TITLE="Pelican Setup"

echo "Welcome to PelicanHPC!"

# things for both frontend and nodes
echo "" > /etc/motd
echo "StrictHostKeyChecking no" >> /etc/ssh/ssh_config
echo "user:$PASSWORD" | chpasswd

# test for master or compute node: $PELICAN_NETWORK will only be there at boot if this is a compute node
computenode=\`dmesg | grep -c nfsroot=$PELICAN_NETWORK\`

if [ \$computenode = 0 ]; then
  # master node
  # dpkg-reconfigure --priority=high xserver-xorg
  rm -R -f /home
  mkdir /home
  mkfs.ext2 -q -m 0 /dev/ram1
  mount /dev/ram1 /home
  install -d /home/user/.config/autostart
  rsync -avz /etc/skel/* /home/user
  touch /home/user/octaverc
  mv /home/user/octaverc /home/user/.octaverc
  echo "[Desktop Entry]" >> /home/user/.config/autostart/xfce4-tips-autostart.desktop
  echo "Hidden=true"  >> /home/user/.config/autostart/xfce4-tips-autostart.desktop
  echo "/usr/bin/startx" >> /home/user/.bash_profile
  bailout
else
  rm -R -f /home
  mkdir /home
  mount $PELICAN_NETWORK.1:/home /home
  myip=(\`/sbin/ifconfig | grep -i "Ethernet" -A 1|grep "inet addr"|cut -d  " " -f 12|cut -d ":" -f 2\`)
  echo "\$myip is up" > /home/user/tmp/\$myip
  bailout2
fi
01SETUP

cat <<02USERSETUP > config/chroot_local-includes/usr/bin/pelican_setup
  pelican_setup_user
  pelican_setup_netdevice
  pelican_terminalserver
  pelican_restart_hpc
02USERSETUP

cat <<03USER > config/chroot_local-includes/usr/bin/pelican_setup_user
#!/bin/bash
bailout(){
exit \$1
}
cd /home/user
HOME="/home/user"
PKTMP="\$HOME/tmp"
echo "Creating temporary directory"
rm -R -f \$PKTMP
mkdir \$PKTMP
chown user.user \$PKTMP
chmod 777 \$PKTMP
# regenerate keys
echo "Generating new RSA keys"
rm -f \$HOME/.ssh/id_rsa*
ssh-keygen  -q -t rsa -N "" -f "\$HOME/.ssh/id_rsa"
cp \$HOME/.ssh/id_rsa.pub \$HOME/.ssh/authorized_keys
chmod 600 \$HOME/.ssh/authorized_keys
# make list of hosts to fping
echo "$PELICAN_NETWORK.2" > \$HOME/fpinghosts
i=2
while [ \$i -lt $MAXNODES ]
do
  i=\`expr \$i + 1\`
  echo $PELICAN_NETWORK.\$i >> \$HOME/fpinghosts
done
bailout
03USER

cat <<04NETDEVICE > config/chroot_local-includes/usr/bin/pelican_setup_netdevice
#!/bin/bash
# modification of netcardconfig from Knoppix.
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
DIALOG="dialog"
[ "\`id -u\`" != "0" ] && exec sudo "\$0" "\$@"
TMP="/tmp/netconfig.tmp\$\$"
bailout(){
rm -f "\$TMP"
exit \$1
}
TITLE="Pelican Setup"
MESSAGE0="No supported network cards found."
MESSAGE1="Please select the network device that connects to the cluster."
NETDEVICES="\$(cat /proc/net/dev | awk -F: '/eth.:|br.:|tr.:|wlan.:/{print \$1}')"
if [ -z "\$NETDEVICES" ]; then
\$DIALOG --title "\$TITLE" --msgbox "\$MESSAGE0"
bailout
fi
count="\$(echo "\$NETDEVICES" | wc -w)"
if [ "\$count" -gt 1 ]; then
DEVICELIST=""
for DEVICE in \$NETDEVICES; do DEVICELIST="\$DEVICELIST \${DEVICE} network_device_\${DEVICE}"; done
rm -f "\$TMP"
echo "Hints about your net devices"
dmesg|grep eth
rm -f "\$TMP"
\$DIALOG --menu "\$MESSAGE1" 18 45 12 \$DEVICELIST 2>"\$TMP" || bailout
read DV <"\$TMP" ; rm -f "\$TMP"
else
# Remove additional spaces
DV="\$(echo \$NETDEVICES)"
fi
IP="$PELICAN_NETWORK.1"
NM="255.255.255.0 "
BC="$PELICAN_NETWORK.255"
ifdown \$DV
sleep 4
CMD="ifconfig \$DV \$IP netmask \$NM broadcast \$BC up"
\$CMD
bailout
04NETDEVICE

cat <<05TERMINALSERVER > config/chroot_local-includes/usr/bin/pelican_terminalserver
#!/bin/sh
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
[ "\`id -u\`" != "0" ] && exec sudo "\$0" "\$@"
bailout(){
exit \$1
}
cp -a /usr/share/pelican/tftpboot/* /var/lib/tftpboot/
# configure dhcp
cat <<DHCP > /etc/dhcp3/dhcpd.conf
# global settings
allow booting;
allow bootp;
default-lease-time 600;
max-lease-time 7200;
subnet $PELICAN_NETWORK.0 netmask 255.255.255.0 {
  next-server $PELICAN_NETWORK.1;
  filename "pxelinux.0";
  option subnet-mask 255.255.255.0;
  range $PELICAN_NETWORK.2 $PELICAN_NETWORK.$MAXNODES;
}
DHCP

# configure atftpd
cat <<TFTP > /etc/default/atftpd
USE_INETD=false
OPTIONS="--daemon --port 69 --tftpd-timeout 300 --retry-timeout 5     --mcast-port 1758 --mcast-addr 239.239.239.0-255 --mcast-ttl 1 --maxthread 100 --verbose=5  /var/lib/tftpboot"
TFTP

# generate /etc/exports
cat <<EXPORTS > /etc/exports
/live/image *(ro,async,no_subtree_check,no_root_squash,fsid=12345)
/home $PELICAN_NETWORK.0/255.255.255.0(rw,root_squash,async,no_subtree_check)
EXPORTS

# start services
sync
/etc/init.d/atftpd start
/etc/init.d/dhcp3-server start
/etc/init.d/nfs-kernel-server start
bailout
05TERMINALSERVER

cat <<06HPC > config/chroot_local-includes/usr/bin/pelican_restart_hpc
#!/bin/sh
PKTMP="/home/user/tmp"
PATH="/bin:/sbin:/usr/bin:/usr/sbin"
export PATH
DIALOG="dialog"
bailout(){
exit 0
}
# check which nodes are up
checknodes(){
rm \$PKTMP/bhosts
sudo fping -a -q -r0 -f /home/user/fpinghosts > \$PKTMP/bhosts
}
retry(){
checknodes
NNODES="\$(grep -c "" \$PKTMP/bhosts)"
MESSAGENODES="\nGo turn on your compute nodes now. \n\nAt the moment \$NNODES compute nodes (not counting this frontend node) are available. \n\nClick no to rescan the available nodes. Click yes when the desired number of nodes are available. You might want to wait a bit if some nodes are still finishing booting up."
\$DIALOG --title "\$TITLE" --defaultno --yesno "\$MESSAGENODES" 20 50 || retry
}
trap bailout 1 2 3 15
TITLE="Restart Pelican HPC"
MESSAGE="\nWe now set up the cluster by finding which nodes are available. If you are doing initial setup, click on yes. If you are resizing a running cluster, be aware that continuing will interrupt any running MPI jobs. Click no abort resizing."
\$DIALOG --title "\$TITLE" --yesno "\$MESSAGE" 15 50 || bailout
retry
# master must be last in the list
echo "$PELICAN_NETWORK.1" | cat >> \$PKTMP/bhosts
# lamboot 2X to generate known_hosts (and an error message) the first time
lamwipe
lamboot \$PKTMP/bhosts
lamwipe
lamboot \$PKTMP/bhosts
lamnodes
sleep 5
# display success message
NNODES="\$(grep -c "" \$PKTMP/bhosts)"
# final report
SUCCESS="\nYour cluster of \$NNODES nodes is (probably) lambooted. If there was a problem, just re-run the script.\nThe nodes in the cluster are listed in the file ~/tmp/bhosts. If you add or remove compute nodes, re-run this script (pelican_restart_hpc) whenever you like."
\$DIALOG --title "\$TITLE" --msgbox "\$SUCCESS" 15 50
bailout
06HPC
######## END OF PELICAN SETUP SCRIPTS #############


######## POST BOOT SCRIPT ####################
install -d config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/
cat <<99START > config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script
#!/bin/sh
cat <<RC_LOCAL > /root/etc/rc.local
#! /bin/sh
pelican_boot_setup
RC_LOCAL
chmod a+x /root/etc/rc.local
99START
chmod +x config/chroot_local-includes/usr/share/initramfs-tools/scripts/live-bottom/99script

# make the scripts in /usr/bin executable
chmod +x config/chroot_local-includes/usr/bin/*

# build the ISO image
lh_build

# safeguard against crashes
umount proc-live
umount sysfs-live
umount devpts-live
sync